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S. Ren

NameS. Ren
First Name
E-mail
Author TypePhd Student
Affiliation

Publications

S. Ren, N. Ahmed, K.L.M. Bertels, Z. Al-Ars, GPU Accelerated Sequence Alignment with Traceback for GATK HaplotypeCaller (January 2019), 17th Asia-Pacific Bioinformatics Conference (APBC 2019), 14-16 Januari 2019, Wuhan, China , accepted for publication in BMC Genomics 2019 [Conference Paper]
S. Ren, N. Ahmed, K.L.M. Bertels, Z. Al-Ars, An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly (October 2018), 18th IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018), 29-31 October 2018, Taichung, Taiwan [Conference Paper]
S. Ren, K.L.M. Bertels, Z. Al-Ars, Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on GPUs 1689_efficient_acceleration_of_the_pairhmms_forward_algorithm_f.pdf (March 2018), Evolutionary Bioinformatics, volume 14 , CC BY-NC [Journal Paper]
S. Ren, K.L.M. Bertels, Z. Al-Ars, GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization 1646_gpuaccelerated_gatk_haplotypecaller_with_loadbalanced_mul.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
J.W. Peltenburg, S. Ren, Z. Al-Ars, Maximizing Systolic Array Efficiency to Accelerate the PairHMM Forward Algorithm 1596_maximizing_systolic_array_efficiency_to_accelerate_the_pair.pdf (December 2016), IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2016), 15-18 December 2016, Shenzhen, China [Conference Paper]
S. Ren, K.L.M. Bertels, Z. Al-Ars, Exploration of Alternative GPU Implementations of the Pair-HMMs Forward Algorithm 1562_exploration_of_alternative_gpu_implementations_of_the_pair.pdf (December 2016), 3rd International Workshop on High Performance Computing on Bioinformatics (HPCB 2016), 15-18 December 2016, Shenzhen, China [Conference Paper]
S. Ren, V.M. Sima, Z. Al-Ars, FPGA Acceleration of the Pair-HMMs Forward Algorithm for DNA Sequence Analysis 1525_fpga_acceleration_of_the_pairhmms_forward_algorithm_for_dn.pdf (November 2015), International Workshop on High Performance Computing on Bioinformatics (HPCB 2015), 9-12 November 2015, Washington DC, USA [Conference Paper]