N. Ahmed
Name | N. Ahmed |
---|---|
First Name | Nauman |
Author Type | Phd Student |
Affiliation |
Publications
S. Ren, N. Ahmed, K.L.M. Bertels, Z. Al-Ars,
GPU Accelerated Sequence Alignment with Traceback for GATK HaplotypeCaller
(January 2019),
17th Asia-Pacific Bioinformatics Conference (APBC 2019), 14-16 Januari 2019, Wuhan, China
, accepted for publication in BMC Genomics 2019
[Conference Paper]
S. Ren, N. Ahmed, K.L.M. Bertels, Z. Al-Ars,
An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly
(October 2018),
18th IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018), 29-31 October 2018, Taichung, Taiwan
[Conference Paper]
N. Ahmed, H. Mushtaq, K.L.M. Bertels, Z. Al-Ars,
GPU Accelerated API for Alignment of Genomics Sequencing Data
(November 2017),
IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2017), 13-16 November 2017, Kansas City, USA
[Conference Paper]
N. Ahmed, K.L.M. Bertels, Z. Al-Ars,
Predictive Genome Analysis Using Partial DNA Sequencing Data
(October 2017),
17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA
[Conference Paper]
H. Mushtaq, N. Ahmed, Z. Al-Ars,
Streaming Distributed DNA Sequence Alignment Using Apache Spark
(October 2017),
17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA
[Conference Paper]
N. Ahmed, K.L.M. Bertels, Z. Al-Ars,
A Comparison of Seed-and-Extend Techniques in Modern DNA Read Alignment Algorithms
(December 2016),
Workshop on Accelerator-Enabled Algorithms and Applications in Bioinformatics (WACEBI 2016), 15 December 2016, Shenzhen, China
[Conference Paper]
Z. Al-Ars, N. Ahmed, K.L.M. Bertels,
Early DNA Analysis Using Incomplete DNA Datasets
(November 2016),
filed in Europe
[Patent]
N. Ahmed, V.M. Sima, E.J. Houtgast, K.L.M. Bertels, Z. Al-Ars,
Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm
(November 2015),
International Conference On Computer Aided Design (ICCAD 2015), 2-6 November 2015, Austin, USA
[Conference Paper]