Publications

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Type Year Author Title
Displaying 1-25 of 1676 result(s).
E.J. Houtgast, V.M. Sima, K.L.M. Bertels, Z. Al-Ars, Hardware Acceleration of BWA-MEM Genomic Short Read Mapping for Longer Read Lengths (to appear: May 2018), Computational Biology and Chemistry (Comput. Biol. Chem) [Journal Paper]
M. Zandrahimi, P. Debaud, A. Castillejo, Z. Al-Ars, An Industrial Case Study of Low Cost Adaptive Voltage Scaling Using Delay Test Patterns (to appear: March 2018), Design, Automation and Test in Europe (DATE 2018), 19-23 March 2018, Dresden, Germany [Conference Paper]
M. Zandrahimi, P. Debaud, A. Castillejo, Z. Al-Ars, Industrial Evaluation of Transition Fault Testing for Cost Effective Offline Adaptive Voltage Scaling (to appear: March 2018), Design, Automation and Test in Europe (DATE 2018), 19-23 March 2018, Dresden, Germany [Conference Paper]
Jianyu Chen, Z. Al-Ars, P. Hofstee, A Matrix-Multiply Unit for Posits in Reconfigurable Logic Using (Open)CAPI (to appear: March 2018), Conference for Next Generation Arithmetic (CoNGA), 28 March 2018, Sentosa, Singapore , CC-BY [Conference Paper]
J.J. Hoozemans, J. van Straten, Z. Al-Ars, S. Wong, Evaluating Auto-adaptation Methods for Fine-Grained Adaptable Processors 1702_evaluating_autoadaptation_methods_for_finegrained_adaptab.pdf (April 2018), 31st International Conference on Architecture of Computing Systems (ARCS2018), 9-12 April 2018, Braunschweig, Germany [Conference Paper]
S. Ren, K.L.M. Bertels, Z. Al-Ars, Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on GPUs 1689_efficient_acceleration_of_the_pairhmms_forward_algorithm_f.pdf (March 2018), Evolutionary Bioinformatics, volume 14 , CC BY-NC [Journal Paper]
J. Yu, H.A. Du Nguyen, L. Xie, M. Taouil, S. Hamdioui, Memristive Devices for Computation-In-Memory (March 2018), Design, Automation and Test in Europe (DATE 2018), 19-23 March 2018, Dresden, Germany [Conference Paper]
P. Bhosale, M. Staring, Z. Al-Ars, F. Berendsen, GPU-Based Stochastic-Gradient Optimization for Non-Rigid Medical Image Registration in Time-Critical Applications 1652_gpubased_stochasticgradient_optimization_for_nonrigid_me.pdf (February 2018), SPIE Medical Imaging Conference, 10-15 February 2018, Houston (TX), United States [Conference Paper]
I. Ashraf, N. Khammassi, M. Taouil, K.L.M. Bertels, Memory and Communication Profiling for Accelerator-based Platforms 1681_memory_and_communication_profiling_for_acceleratorbased_pl.pdf (December 2017), IEEE Transactions on Computers (TC), volume PP, issue 29 , Pre-print [Journal Paper]
G Smaragdos, R. Kukreja, I. Sourdis, Z. Al-Ars, C. Kachris, D. Soudris, C. Strydis, BrainFrame: A node-level heterogeneous accelerator platform for neuron simulations 1636_brainframe_a_nodelevel_heterogeneous_accelerator_platform.pdf (November 2017), Journal of Neural Engineering (J NEURAL ENG), volume 14 [Journal Paper]
J.W. Peltenburg, A.S. Hesam, Z. Al-Ars, Pushing Big Data into Accelerators: Can the JVM Saturate Our Hardware? 1637_pushing_big_data_into_accelerators_can_the_jvm_saturate_ou.pdf (November 2017), International Workshop on OpenPOWER for HPC (IWOPH17), 22 June 2017, Frankfurt, Germany [Conference Paper]
J. Fang, Y.T.B. Mulder, K Huang, Y Qiao, X Zeng, P. Hofstee, J Lee, J Hidders, Adopting OpenCAPI for High Bandwidth Database Accelerators 1649_adopting_opencapi_for_high_bandwidth_database_accelerators.pdf (November 2017), 3rd International Workshop on Heterogeneous High-performance Reconfigurable Computing (H2RC 2017), 17 November 2017, Denver, USA [Conference Paper]
E. I. Vatajelu, P. Pouyan, S. Hamdioui, State of the Art and Challenges for Test and Reliability of Emerging Non-volatile Resistive Memories (November 2017), International Journal of Circuit Theory and Applications [Journal Paper]
S. Hamdioui, P. Pouyan, H Li, Y. Wang, A Raychowdhur, I Yoon, Test and Reliability of Emerging Non-Volatile Memories (November 2017), 26th IEEE Asian Test Symposium (ATS 2017), 27-30 November 2017, Taipei, Taiwan [Conference Proceedings]
N. Ahmed, H. Mushtaq, K.L.M. Bertels, Z. Al-Ars, GPU Accelerated API for Alignment of Genomics Sequencing Data 1662_gpu_accelerated_api_for_alignment_of_genomics_sequencing_da.pdf (November 2017), IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2017), 13-16 November 2017, Kansas City, USA [Conference Paper]
S. Varsamopulos, D. B. Benjamin Criger, K.L.M. Bertels, Decoding Small Surface Codes with Feedforward Neural Networks 1699_decoding_small_surface_codes_with_feedforward_neural_networ.pdf (November 2017), Quantum Science and Technology (QST), volume 3, issue 1 [Journal Paper]
E.J. Houtgast, V.M. Sima, Z. Al-Ars, High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL 1644_high_performance_streaming_smithwaterman_implementation_wi.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA , full paper [Conference Paper]
H. Mushtaq, N. Ahmed, Z. Al-Ars, Streaming Distributed DNA Sequence Alignment Using Apache Spark 1645_streaming_distributed_dna_sequence_alignment_using_apache_s.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
S. Ren, K.L.M. Bertels, Z. Al-Ars, GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization 1646_gpuaccelerated_gatk_haplotypecaller_with_loadbalanced_mul.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
D.H.P. Kraak, M. Taouil, I.O. Agbo, S. Hamdioui, P Weckx, S. Cosemans, F. Catthoor, Impact and Mitigation of Sense Amplifier Aging Degradation Using Realistic Workloads (October 2017), IEEE Transactions On Very Large Scale Integration (VLSI) Systems (TVLSI) [Journal Paper]
A. L. Sartor, P. H. E. Becker, J.J. Hoozemans, S. Wong, A.C.S. Beck, Dynamic Trade-off among Fault Tolerance, Energy Consumption, and Performance on a Multiple-issue VLIW Processor 1650_dynamic_tradeoff_among_fault_tolerance_energy_consumption.pdf (October 2017), IEEE Transactions on Multi-Scale Computing Systems (TMSCS), volume PP, issue 99 [Journal Paper]
N. Ahmed, K.L.M. Bertels, Z. Al-Ars, Predictive Genome Analysis Using Partial DNA Sequencing Data 1651_predictive_genome_analysis_using_partial_dna_sequencing_dat.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
J. Yu, R. Nane, I. Ashraf, M. Taouil, S. Hamdioui, H. Corporaal, K.L.M. Bertels, Skeleton-based Synthesis Flow for Computation-In-Memory Architectures (October 2017), IEEE Transactions on Emerging Topics in Computing, volume PP, issue 99 , Pre-publish [Journal Paper]