S. Isaza Ramirez, Multicore Architectures for Bioinformatics Applications (October 2011), [Phd Thesis]

S. Isaza Ramirez, E.J. Houtgast, G.N. Gaydadjiev, HMMER Performance Model for Multicore Architectures (September 2011), 14th Euromicro Conference On Digital System Design (DSD 2011), 31 August - 2 September 2011, Oulu, Finland [Conference Paper]

S. Isaza Ramirez, E.J. Houtgast, G.N. Gaydadjiev, Sequence Alignment Application Model for Multi- and Manycore Architectures (September 2011), International Journal of Information and Computer Security (IJICS), volume 4, issue 3 [Journal Paper]

S. Isaza Ramirez, E.J. Houtgast, F. Sanchez, A. Ramirez, G.N. Gaydadjiev, Scaling HMMER Performance on Multicore Architectures (July 2011), IEEE International Workshop on Multicore Computing Systems (MuCoCoS 2011), 1 July 2011, Seoul, Korea [Conference Paper]

S. Isaza Ramirez, F. Sanchez, F. Cabarcas, A. Ramirez, G.N. Gaydadjiev, Parametrizing Multicore Architectures for Multiple Sequence Alignment (May 2011), ACM International Conference on Computing Frontiers (CF 2011), 3-5 May 2011, Ischia, Italy [Conference Paper]

A. Ramirez, F. Cabarcas, B.H.H. Juurlink, M. Alvarez, F. Sanchez, A. Azevedo, C.H. Meenderinck, C.B. Ciobanu, S. Isaza Ramirez, G.N. Gaydadjiev, The SARC Architecture (October 2010), IEEE Micro, volume 30, issue 5 , Special Issue on European Multicore Processing Projects [Journal Paper]

S. Isaza Ramirez, F. Sanchez, G.N. Gaydadjiev, A. Ramirez, M. Valero, Scalability Analysis of Progressive Alignment in a Multicore (February 2010), International Workshop on Multi-Core Computing Systems (MuCoCoS 2010), 15 February 2010, Krakow, Poland [Conference Paper]

S. Isaza Ramirez, G.N. Gaydadjiev, Bioinformatics Specific Cell BE ISA Extensions (November 2008), 19th Annual Workshop on Circuits, Systems and Signal Processing (ProRISC 2008), 27-28 November 2008, Veldhoven, The Netherlands [Conference Paper]

S. Isaza Ramirez, G.N. Gaydadjiev, Limitations of Current Multicore Architectures for Bioinformatics Applications - A Case Study on Cell BE (July 2008), 4th International Summer School on Advanced Computer Architecture and Compilation for Embedded Systems (ACACES 2008), 13-19 July 2008, L'Aquila, Italy , ACACES Poster Abstracts [Conference Paper]

S. Isaza Ramirez, F. Sanchez, G.N. Gaydadjiev, A. Ramirez, M. Valero, Preliminary Analysis of the Cell BE Processor Limitations for Sequence Alignment Applications (July 2008), 8th International Workshop on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS 2008), 21-24 July 2008, Samos, Greece [Conference Paper]